NanoVar¶

Description¶

NanoVar is a neural-network-based genomic structural variant (SV) caller that utilizes low-depth long-read sequencing data generated from Oxford Nanopore Technologies (ONT). It characterizes SVs with high accuracy and speed using only 4x depth genomic sequencing datasets, thereby saving time, sequencing cost, and computational storage, which makes it compatible for large-scale cohort SV-association studies or routine clinical SV investigations.

Environment Modules¶

Run module spider nanovar to find out what environment modules are available for this application.

Environment Variables¶

HPC_nanovar_DIR - installation directory
HPC_nanovar_BIN - executable directory

Categories¶

phylogenetics