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NanoSV

Description

nanosv website

NanoSV is a software package that can be used to identify structural genomic variations in long-read sequencing data, such as data produced by Oxford Nanopore Technologies’ MinION, GridION or PromethION instruments, or Pacific Biosciences RSII or Sequel sequencers. NanoSV has been extensively tested using Oxford Nanopore MinION sequencing data, as described here: https://www.nature.com/articles/s41467-017-01343-4 https://link.springer.com/article/10.1007%2Fs00401-017-1743-5 The core algorithm of NanoSV identifies split- and gapped-aligned reads and clusters the reads according to the orientations and genomic positions of the read segments to define breakpoint-junctions of structural variations.

Environment Modules

Run module spider nanosv to find out what environment modules are available for this application.

Environment Variables

  • HPC_NANOSV_DIR - installation directory
  • HPC_NANOSV_BIN - executable directory

Citation

If you publish research that uses nanosv you have to cite it as follows:

https://www.nature.com/articles/s41467-017-01343-4

Categories

biology, genomics