nanolyse¶

Description¶

Nanolyse removes reads mapping to the lambda phage genome from a fastq file. This script uses Heng Li's minimap2 and his mappy Python binding.

Environment Modules¶

Run module spider nanolyse to find out what environment modules are available for this application.

Environment Variables¶

HPC_NANOLYSE_DIR - installation directory
HPC_NANOLYSE_BIN - executable directory

Citation¶

If you publish research that uses nanolyse you have to cite it as follows:

De Coster, W., D’Hert, S., Schultz, D. T., Cruts, M., & Van Broeckhoven, C. (2018). NanoPack: visualizing and processing long-read sequencing data. Bioinformatics, 34(15), 2666–2669. https://doi.org/10.1093/bioinformatics/bty149

Categories¶

genomics, biology