Nanofilt¶

Description¶

Filtering on quality and/or read length, and optional trimming after passing filters. Reads from stdin, writes to stdout. Optionally reads directly from an uncompressed file specified on the command line.

Environment Modules¶

Run module spider nanofilt to find out what environment modules are available for this application.

Environment Variables¶

HPC_NANOFILT_DIR - installation directory
HPC_NANOFILT_BIN - executable directory

Citation¶

If you publish research that uses nanofilt you have to cite it as follows:

https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939

Categories¶

phylogenetics