NanoCount¶
Description¶
NanoCount estimates transcripts abundance from Oxford Nanopore direct-RNA sequencing datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads
Environment Modules¶
Run module spider nanocount to find out what environment modules are available for this application.
Environment Variables¶
- HPC_NANOCOUNT_DIR - installation directory
- HPC_NANOCOUNT_BIN - executable directory
Citation¶
If you publish research that uses nanocount you have to cite it as follows:
Adrien Leger. (2020, January 28). a-slide/NanoCount. Zenodo.
Categories¶
phylogenetics