msvar¶

Description¶

MTD: Meta-Transcriptome Detector, is a software that has two sub-pipelines to jointly analyze of host transcriptome with its microbiome by using bulk RNA-seq and single-cell RNA-seq data, respectively. It supports comprehensive microbiome species, including viruses, bacteria, protozoa, fungi, plasmids, and vectors. Modules system sets up the following environment variables for this module: * MTDIR - executable directory alias

Environment Modules¶

Run module spider mtd to find out what environment modules are available for this application.

Environment Variables¶

HPC_MTD_DIR - installation directory
HPC_MTD_BIN - executable directory

Categories¶

biology, genomics