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msprime

Description

msprime website

msprime is a Python API and command line interface for simulating the coalescent with recombination based on tskit. Please see the documentation for further information and installation instructions.

Environment Modules

Run module spider msprime to find out what environment modules are available for this application.

Environment Variables

  • HPC_MSPRIME_DIR - installation directory
  • HPC_MSPRIME_BIN - executable directory

Citation

If you publish research that uses msprime you have to cite it as follows:

https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004842

Categories

phylogenetics