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MRtrix

Description

mrtrix website

MRtrix provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

Environment Modules

Run module spider mrtrix to find out what environment modules are available for this application.

Environment Variables

  • HPC_MRTRIX_DIR - installation directory
  • HPC_MRTRIX_BIN - executable directory

Citation

If you publish research that uses mrtrix you have to cite it as follows:

Tournier, J.-D., Smith, R. E., Raffelt, D., Tabbara, R., Dhollander, T., Pietsch, M., Christiaens, D., Jeurissen, B., Yeh, C.-H., & Connelly, A. (2019). MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation. NeuroImage, 202, 116137. https://doi.org/10.1016/j.neuroimage.2019.116137

Categories

biology, imaging