MRtrix

Description

mrtrix website

MRtrix provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density * MRTRIX - mrtrix directory

Environment Modules

Run module spider mrtrix to find out what environment modules are available for this application.

Environment Variables

Citation

If you publish research that uses mrtrix you have to cite it as follows:

Processing was performed using the MRtrix3 package (Tournier et al., 2019).
J.-D. Tournier, R. E. Smith, D. Raffelt, R. Tabbara, T. Dhollander, M. Pietsch, D. Christiaens, B. Jeurissen, C.-H. Yeh, and A. Connelly. MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation. NeuroImage, 202 (2019), pp. 116–37.<!-- END INCLUDE -->

Categories

biology, imaging