MRtrix

Description

mrtrix website

MRtrix provides a set of tools to perform diffusion-weighted MRI white matter tractography in the presence of crossing fibres, using Constrained Spherical Deconvolution (Tournier et al.. 2004; Tournier et al. 2007), and a probabilisitic streamlines algorithm (e.g. Behrens et al., 2003; Parker et al., 2003). These applications have been written from scratch in C++, using the functionality provided by the GNU Scientific Library, and gtkmm. The software is currently capable of handling DICOM, NIfTI and AnalyseAVW image formats, amongst others. The source code is distributed under the GNU General Public License. Modules system sets up the following environment variables for this module:

Environment Modules

Run module spider mrtrix to find out what environment modules are available for this application.

Environment Variables

• HPC_MRTRIX_DIR - installation directory
• HPC_MRTRIX_BIN - executable directory

Citation

If you publish research that uses mrtrix you have to cite it as follows:

Processing was performed using the MRtrix3 package (Tournier et al., 2019).
J.-D. Tournier, R. E. Smith, D. Raffelt, R. Tabbara, T. Dhollander, M. Pietsch, D. Christiaens, B. Jeurissen, C.-H. Yeh, and A. Connelly. MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation. NeuroImage, 202 (2019), pp. 116–37.<!-- END INCLUDE -->

Categories

statistics