mOTUs¶

Description¶

Phylogenetic markers are genes that can be used to reconstruct the evolutionary history of organisms and to profile the taxonomic composition of environmental samples.

Environment Modules¶

Run module spider motus to find out what environment modules are available for this application.

Environment Variables¶

HPC_MOTUS_DIR - installation directory
HPC_MOTUS_BIN - executable directory

Citation¶

If you publish research that uses motus you have to cite it as follows:

If you find mOTUs useful in your work, please cite: - Ruscheweyh, H. J., Milanese, A., Paoli, L., Karcher, N., Clayssen, Q., Keller, M. I., Wirbel, J., Bork, P., Mende, D. R., Zeller, G., & Sunagawa, S. (2022). Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments. Microbiome, 10(1), 212.https://doi.org/10.1186/s40168-022-01410-z

For mOTUs2: - Milanese, A., Mende, D. R., Paoli, L., Salazar, G., Ruscheweyh, H. J., Cuenca, M., Hingamp, P., Alves, R., Costea, P. I., Coelho, L. P., Schmidt, T. S. B., Almeida, A., Mitchell, A. L., Finn, R. D., Huerta-Cepas, J., Bork, P., Zeller, G., & Sunagawa, S. (2019). Microbial abundance, activity and population genomic profiling with mOTUs2. Nature Communications, 10(1), 1014. https://doi.org/10.1038/s41467-019-08844-4

For mOTUs1: - Sunagawa, S., Mende, D. R., Zeller, G., Izquierdo-Carrasco, F., Berger, S. A., Kultima, J. R., Coelho, L. P., Arumugam, M., Tap, J., Nielsen, H. B., Rasmussen, S., Brunak, S., Pedersen, O., Guarner, F., de Vos, W. M., Wang, J., Li, J., Doré, J., Ehrlich, S. D., Stamatakis, A., & Bork, P. (2013). Metagenomic species profiling using universal phylogenetic marker genes. Nature Methods, 10(12), 1196–1199. https://doi.org/10.1038/nmeth.2693

Categories¶

phylogenetics