Mosdepth¶
Description¶
Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing.
Environment Modules¶
Run module spider mosdepth to find out what environment modules are available for this application.
Environment Variables¶
- HPC_MOSDEPTH_DIR - installation directory
- HPC_MOSDEPTH_BIN - executable directory
Citation¶
If you publish research that uses mosdepth you have to cite it as follows:
Pedersen, B. S., & Quinlan, A. R. (2018). Mosdepth: Quick coverage calculation for genomes and exomes. Bioinformatics, 34(5), 867–868. https://doi.org/10.1093/bioinformatics/btx699
Categories¶
biology, phylogenetics