momi¶

Description¶

momi (MOran Models for Inference) is a Python package that computes the expected sample frequency spectrum (SFS), a statistic commonly used in population genetics, and uses it to fit demographic history.

Environment Modules¶

Run module spider momi to find out what environment modules are available for this application.

Environment Variables¶

HPC_MOMI_DIR - installation directory
HPC_MOMI_BIN - executable directory

Citation¶

If you publish research that uses momi you have to cite it as follows:

Portik, D. M., Leaché, A. D., Rivera, D., Barej, M. F., Burger, M., Hirschfeld, M., … & Fujita, M. K. (2017). Evaluating mechanisms of diversification in a Guineo‐Congolian tropical forest frog using demographic model selection. Molecular ecology, 26(19), 5245-5263.

Categories¶

phylogenetics, biology