mlst

Description

mlst website

Scan contig files against traditional PubMLST typing schemes This module also includes cgmlst (https://github.com/aldertzomer/cgmlst) and cgmlst-dists (https://github.com/tseemann/cgmlst-dists)

Environment Modules

Run module spider mlst to find out what environment modules are available for this application.

Environment Variables

• HPC_MLST_DIR - installation directory
• HPC_MLST_BIN - executable directory

Categories

phylogenetics