mlcoalsim¶

Description¶

The application program mlcoalsim (multilocus coalescent simulations) is designed to generate samples and calculate neutrality tests and other statistics under stationary model, several demographic models or strong positive selection using coalescent theory. It performs multilocus analyses and linked loci and unlinked loci are enabled. Multilocus statistics for unlinked loci are the average and the variance for each statistic.

Environment Modules¶

Run module spider mlcoalsim to find out what environment modules are available for this application.

Environment Variables¶

HPC_MLCOALSIMG_DIR - installation directory
HPC_MLCOALSIMG_BIN - executable directory
HPC_MLCOALSIMG_DOC - documentation directory
HPC_MLCOALSIMG_EXE - examples directory

Citation¶

If you publish research that uses mlcoalsim you have to cite it as follows:

S.E. Ramos-Onsins (unpublished, but used in Heidel et al., Mol. Ecol. 2010)

Categories¶

biology, phylogenetics