MiXCR¶
Description¶
MiXCR is a universal software for fast and accurate analysis of raw T- or B- cell receptor repertoire sequencing data.
Environment Modules¶
Run module spider mixcr to find out what environment modules are available for this application.
Environment Variables¶
- HPC_MIXCR_DIR - installation directory
- HPC_MIXCR_BIN - executable directory
- HPC_MIXCR_DOC - documentation directory
Citation¶
If you publish research that uses mixcr you have to cite it as follows:
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Bolotin, D. A., Poslavsky, S., Mitrophanov, I., Shugay, M., Mamedov, I. Z., Putintseva, E. V., & Chudakov, D. M. (2015). MiXCR: Software for comprehensive adaptive immunity profiling. Nature Methods, 12(5), 380–381. https://doi.org/10.1038/nmeth.3364
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Bolotin, D. A., Poslavsky, S., Davydov, A. N., Frenkel, F. E., Fanchi, L., Zolotareva, O. I., Hemmers, S., Putintseva, E. V., Obraztsova, A. S., Shugay, M., Ataullakhanov, R. I., Rudensky, A. Y., Schumacher, T. N., & Chudakov, D. M. (2017). Antigen receptor repertoire profiling from RNA-seq data. Nature Biotechnology, 35(10), 908–911. https://doi.org/10.1038/nbt.3979
Categories¶
biology, phylogenetics