MiXCR¶
Description¶
MiXCR is a universal software for fast and accurate analysis of raw T- or B- cell receptor repertoire sequencing data.
Environment Modules¶
Run module spider mixcr to find out what environment modules are available for this application.
Environment Variables¶
- HPC_MIXCR_DIR - installation directory
- HPC_MIXCR_BIN - executable directory
- HPC_MIXCR_DOC - documentation directory
Citation¶
If you publish research that uses mixcr you have to cite it as follows:
Dmitriy A. Bolotin, Stanislav Poslavsky, Igor Mitrophanov, Mikhail Shugay, Ilgar Z. Mamedov, Ekaterina V. Putintseva, and Dmitriy M. Chudakov. "MiXCR: software for comprehensive adaptive immunity profiling." Nature methods 12, no. 5 (2015): 380-381.
Dmitriy A. Bolotin, Stanislav Poslavsky, Alexey N. Davydov, Felix E. Frenkel, Lorenzo Fanchi, Olga I. Zolotareva, Saskia Hemmers, Ekaterina V. Putintseva, Anna S. Obraztsova, Mikhail Shugay, Ravshan I. Ataullakhanov, Alexander Y. Rudensky, Ton N. Schumacher & Dmitriy M. Chudakov. "Antigen receptor repertoire profiling from RNA-seq data." Nature Biotechnology 35, 908–911 (2017)
Categories¶
biology, phylogenetics