mitohifi¶
Description¶
MitoHiFi is a python workflow that assembles mitogenomes from Pacbio HiFi reads.
Environment Modules¶
Run module spider mitohifi to find out what environment modules are available for this application.
Environment Variables¶
- HPC_SINGULARITY_IMAGE - singularity image
Citation¶
If you publish research that uses mitohifi you have to cite it as follows:
When using MitoHifi, please cite their Zenodo:
DOI: 10.5281/zenodo.5205678 https://zenodo.org/record/5205678#.YlVMIi8w1TY
And please cite MitoFinder:
Allio, R, Schomaker‐Bastos, A, Romiguier, J, Prosdocimi, F, Nabholz, B, Delsuc, F. MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics. Mol Ecol Resour. 2020; 00: 1– 14. https://doi.org/10.1111/1755-0998.13160
For tRNAs annotation:
Laslett, D., & Canbäck, B. (2008). ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences. Bioinformatics, 24(2), 172-175.
Categories¶
genomics, sequencing