MITObim¶
Description¶
The pipeline was originally developed for Illumina data, but thanks to the versatility of the MIRA assembler, MITObim supports in principle also data from the Iontorrent, 454 and PacBio sequencing platforms.
Environment Modules¶
Run module spider mitobim to find out what environment modules are available for this application.
Environment Variables¶
- HPC_MITOBIM_DIR - installation directory
- HPC_MITOBIM_BIN - executable directory
- HPC_MITOBIM_SCP - scripts directory
- HPC_MITOBIM_EXE - example directory
- HPC_MITOBIM_DOC - documentation directory
Citation¶
If you publish research that uses mitobim you have to cite it as follows:
MITObim pipeline described in Hahn et al. 2013
Categories¶
phylogenetics