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miRge

Description

mirge website

miRge is a logical, ultrafast, small RNA-seq solution to process samples in a highly multiplexed fashion, resulting in dramatically decreased computational requirements when processing sets of samples in a single run.

Environment Modules

Run module spider mirge to find out what environment modules are available for this application.

Environment Variables

  • HPC_MIRGE_DIR - installation directory
  • HPC_MIRGE_BIN - executable directory
  • HPC_MIRGE_DOC - documentation directory
  • MIRGE_INDEXES - indexes directory

Citation

If you publish research that uses mirge you have to cite it as follows:

Baras, A. S., Myers, J. R., Gupta, S., Weng, P. L., Ashton, J. M., Cornish, T. C., & Halushka, M. K. (2015). miRge: A multiplexed method of processing small RNA-seq data to determine microRNA entropy. PLoS ONE, 10(11), e0143066. https://doi.org/10.1371/journal.pone.0143066

Categories

phylogenetics