MinPath¶

Description¶

MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achieving a more conservative, yet more faithful, estimation of the biological pathways for a query dataset.

Environment Modules¶

Run module spider minpath to find out what environment modules are available for this application.

Environment Variables¶

HPC_MINPATH_DIR - installation directory
HPC_MINPATH_BIN - executable directory
HPC_MINPATH_DOC - documentation directory
HPC_MINPATH_EXE - examples directory
HPC_MINPATH_DAT - data directory

Citation¶

If you publish research that uses minpath you have to cite it as follows:

Ye, Y., & Doak, T. G. (2009). A parsimony approach to biological pathway reconstruction/inference for genomes and metagenomes. PLoS Computational Biology, 5(8), e1000465. https://doi.org/10.1371/journal.pcbi.1000465

Categories¶

biology, phylogenetics