MinPath¶

Description¶

MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achieving a more conservative, yet more faithful, estimation of the biological pathways for a query dataset.

Environment Modules¶

Run module spider minpath to find out what environment modules are available for this application.

Environment Variables¶

HPC_MINPATH_DIR - installation directory
HPC_MINPATH_BIN - executable directory
HPC_MINPATH_DOC - documentation directory
HPC_MINPATH_EXE - examples directory
HPC_MINPATH_DAT - data directory

Citation¶

If you publish research that uses minpath you have to cite it as follows:

Reference: Yuzhen Ye and Thomas G. Doak. A parsimony approach to biological pathway reconstruction/inference for genomes and metagenomes. PLoS Computational Biology, 2009, 5(8): e1000465

Categories¶

biology, phylogenetics