minigraph¶

Description¶

Minigraph is a sequence-to-graph mapper and graph constructor. It finds approximate locations of a query sequence in a sequence graph and incrementally augments an existing graph with long query subsequences diverged from the graph. The figure on the right briefly explains the procedure.

Environment Modules¶

Run module spider minigraph to find out what environment modules are available for this application.

Environment Variables¶

HPC_MINIGRAPH_DIR - installation directory
HPC_MINIGRAPH_BIN - executable directory

Categories¶

phylogenetics