Citation

If you publish research that uses Mikado you have to cite it as follows:

If you use Mikado in your work, please consider to cite:

Venturini, L., Caim, S., Kaithakottil, G., Mapleson, D. L., & Swarbreck, D. (2018). Leveraging multiple transcriptome assembly methods for improved gene structure annotation. GigaScience, 7(8), giy093. https://doi.org/10.1093/gigascience/giy093

If you also use Portcullis to provide reliable junctions to Mikado, either independently or as part of the Daijin pipeline, please consider to cite:

Mapleson, D. L., Venturini, L., Kaithakottil, G., & Swarbreck, D. (2018). Efficient and accurate detection of splice junctions from RNA-seq with Portcullis. GigaScience, 7(12), giy131. https://doi.org/10.1093/gigascience/giy131