MIGRATE-N

Description

migraten website

Migrate-n estimates effective population sizes and past migration rates between n population assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes. Migrate uses maximum likelihood or Bayesian inference to jointly estimate all parameters. It can use the following data types: * Sequence data using Felsenstein's 84 model with or without site rate variation * Single nucleotide polymorphism data (sequence-like data input, HAPMAP-like data input) * Microsatellite data using a stepwise mutation model or a brownian motion mutation model (using the repeatlength input format or the fragment-length input format) * Electrophoretic data using an 'infinite' allele model. This module provides the serial and the threaded versions of Migrate-N. Load the migraten/3.6.6-mpi module to access the MPI version or add the "intel" and "openmpi" modules and then load migraten/3.6.6.

Environment Modules

Run module spider migraten to find out what environment modules are available for this application.

Environment Variables

• HPC_MIGRATEN_DIR - installation directory
• HPC_MIGRATEN_BIN - executable directory

Categories

biology, genomics