MIGRATE-N

Description

migraten website

This module enables the use of the Migrate-n software Migrate estimates effective population sizes and past migration rates between n population assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes. Migrate uses maximum likelihood or Bayesian inference to jointly estimate all parameters. It can use the following data types: • Sequence data using Felsenstein's 84 model with or without site rate variation • Single nucleotide polymorphism data (sequence-like data input, HAPMAP-like data input) • Microsatellite data using a stepwise mutation model or a brownian motion mutation model (using the repeatlength input format or the fragment-length input format) •Electrophoretic data using an 'infinite' allele model. This module provides the serial and the threaded versions of Migrate-N. Load the migraten/3.3.0-mpi module to access the MPI version or add the "intel" and "openmpi" modules.

Environment Modules

Run module spider migraten to find out what environment modules are available for this application.

Environment Variables

• HPC_MIGRATEN_DIR - installation directory
• HPC_MIGRATEN_BIN - executable directory

Categories

biology, genomics