MHAP¶

Description¶

MHAP (pronounced MAP) is a reference implementation of a probabilistic sequence overlapping algorithm. Designed to efficiently detect all overlaps between noisy long-read sequence data. It efficiently estimates Jaccard similarity by compressing sequences to their representative fingerprints composed on min-mers (minimum k-mer).

Environment Modules¶

Run module spider mhap to find out what environment modules are available for this application.

Environment Variables¶

HPC_MHAP_DIR - installation directory
HPC_MHAP_BIN - executable directory
HPC_MHAP_LIB - documentation directory

Categories¶

biology, sequencing