MGEScan

Description

mgescan website

MGEScan on Galaxy is the latest version of MGEScan to identify long terminal repeats (LTR) and non-LTR retroelements in eukaryotic genomic sequences on a web interface or on a command line. HMMER v3.1b1 and openMPI are supported for MGEScan-LTR and MGEScan-nonLTR programs so the better performance is guaranteed than previous version of MGEScan. Cloud image is available on Amazon Cloud (EC2) to utilize on-demand computing resources for data analysis.

Environment Modules

Run module spider mgescan to find out what environment modules are available for this application.

Environment Variables

• HPC_MGESCAN_DIR - installation directory
• HPC_MGESCAN_BIN - executable directory

Categories

biology, genomics