methylpy¶
Description¶
Methylpy, a pyhton-based analysis pipeline for
(single-cell) (whole-genome) bisulfite sequencing data (single-cell) NOMe-seq data differential methylation analysis
Environment Modules¶
Run module spider methylpy to find out what environment modules are available for this application.
Environment Variables¶
- HPC_METHYLPY_DIR - installation directory
- HPC_METHYLPY_BIN - executable directory
Citation¶
If you publish research that uses methylpy you have to cite it as follows:
Schultz, M. D., He, Y., Whitaker, J. W., Hariharan, M., Mukamel, E. A., Leung, D., Rajagopal, N., Nery, J. R., Urich, M. A., Chen, H., Lin, S., Lin, Y., Ren, B., Sejnowski, T. J., Wang, W., & Ecker, J. R. (2015). Human body epigenome maps reveal noncanonical DNA methylation variation. Nature, 523(7559), 212–216. https://doi.org/10.1038/nature14465
Categories¶
biology, phylogenetics