MethylDackel¶

Description¶

MethylDackel (formerly named PileOMeth, which was a temporary name derived due to it using a PILEup to extract METHylation metrics) will process a coordinate-sorted and indexed BAM or CRAM file containing some form of BS-seq alignments and extract per-base methylation metrics from them. MethylDackel requires an indexed fasta file containing the reference genome as well.

Environment Modules¶

Run module spider methyldackel to find out what environment modules are available for this application.

Environment Variables¶

HPC_METHYLDACKEL_DIR - installation directory
HPC_METHYLDACKEL_BIN - executable directory

Citation¶

If you publish research that uses methyldacket you have to cite it as follows:

There are no immediate plans for a MethylDackel publication. If you use MethylDackel (or PileOMeth, as it was formerly known) in your research, please simply cite the URL for this repository on github.

Categories¶

phylogenetics