MetaVelvet¶

Description¶

Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454 or SOLiD MetaVelvet is a single-genome and de Bruijn-graph based assembler Velvet modified and extended for de novo metagenome assembly. The fundamental ideas are first decomposing de Bruijn graph constructed from mixed short reads into individual sub-graphs and second building scaffolds based on every decomposed de Bruijn sub-graph as isolate species genome. meta-velvetg - MAXKMERLENGTH=63 MetaVelvet 1.2.01 is based on Velvet 1.1.06.

Environment Modules¶

Run module spider metavelvet to find out what environment modules are available for this application.

Environment Variables¶

HPC_METAVELVET_DIR - installation directory
HPC_METAVELVET_BIN - executable directory

Categories¶

biology, genomics