Metaeuk

Description

metaeuk website

MetaEuk is a modular toolkit designed for large-scale gene discovery and annotation in eukaryotic metagenomic contigs. MetaEuk combines the fast and sensitive homology search capabilities of MMseqs2 with a dynamic programming procedure to recover optimal exons sets. It reduces redundancies in multiple discoveries of the same gene and resolves conflicting gene predictions on the same strand. MetaEuk is GPLv3-licensed open source software that is implemented in C++ and available for Linux and macOS. The software is designed to run efficiently on multiple cores.

Environment Modules

Run module spider metaeuk to find out what environment modules are available for this application.

Environment Variables

• HPC_METAEUK_DIR - installation directory
• HPC_METAEUK_BIN - executable directory
• HPC_METAEUK_DB - reference database

Categories

phylogenetics