MetaCompare¶

Description¶

MetaCompare is a computational pipeline for prioritizing resistome risk by estimating the potential for ARGs to be disseminated into human pathogens from a given environmental sample based on metagenomic sequencing data.

Environment Modules¶

Run module spider metacompare to find out what environment modules are available for this application.

Environment Variables¶

HPC_METACOMPARE_DIR - installation directory
HPC_METACOMPARE_BIN - executable directory
HPC_METACOMPARE_DB - blast database directory

Citation¶

If you publish research that uses metacompare you have to cite it as follows:

Oh, M., Pruden, A., Chen, C., Heath, L. S., Xia, K., & Zhang, L. (2018). MetaCompare: A computational pipeline for prioritizing environmental resistome risk. FEMS Microbiology Ecology, 94(5), fiy039. https://doi.org/10.1093/femsec/fiy039

Categories¶

phylogenetics