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metabolic

Description

metabolic website

This software enables the prediction of metabolic and biogeochemical functional trait profiles to any given genome datasets.

  • GTDBTK_DATA_PATH - reference database

Environment Modules

Run module spider metabolic to find out what environment modules are available for this application.

Environment Variables

  • HPC_METABOLIC_DIR - installation directory
  • HPC_METABOLIC_BIN - executable directory
  • HPC_METABOLIC_REF - rereference database

Additional Usage Information

Run the following lines to display a list of available commands and user help: 

$ METABOLIC-C.pl -help

$ METABOLIC-G.pl -help

Citation

If you publish research that uses metabolic you have to cite it as follows:

Zhichao Zhou, Patricia Q. Tran, Adam M. Breister, Yang Liu, Kristopher Kieft, Elise S. Cowley, Ulas Karaoz, Karthik Anantharaman."METABOLIC: High-throughput profiling of microbial genomes for functional traits, biogeochemistry, and community-scale metabolic networks" bioRxiv 761643 https://doi.org/10.1101/761643

Categories

phylogenetics