Meta-Marc¶

Description¶

Meta-MARC is a set of profile Hidden Markov Models develoepd for the purpose of screening and profiling resistance genes in DNA-based metagenomic data. This tool was developed for the characterization of various resistance classes, mechanisms, and gene/operon groups from raw sequencing data much in the way that microbiome tools profile the bacterial taxonomy of metagenomic samples. Meta-MARC is not intended to be used as a final annotation or all-in-one tool; this software simply offers the user another view of complex metagenomic data. Users are encouraged to perform further statistical testing on their data to validate results obtained from Meta-MARC.

Environment Modules¶

Run module spider meta-marc to find out what environment modules are available for this application.

Environment Variables¶

HPC_METAMARC_DIR - installation directory
HPC_METAMARC_BIN - executable directory

Categories¶

phylogenetics