Merqury¶
Description¶
Often, genome assembly projects have illumina whole genome sequencing reads available for the assembled individual. The k-mer spectrum of this read set can be used for independently evaluating assembly quality without the need of a high quality reference. Merqury provides a set of tools for this purpose.
Environment Modules¶
Run module spider merqury to find out what environment modules are available for this application.
Environment Variables¶
- HPC_MERQURY_DIR - installation directory
- HPC_MERQURY_BIN - executable directory
Citation¶
If you publish research that uses merqury you have to cite it as follows:
Categories¶
phylogenetics