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Megraft

Description

megraft website

Megraft: A software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length metagenomes.

Environment Modules

Run module spider megraft to find out what environment modules are available for this application.

Environment Variables

  • HPC_MEGRAFT_DIR - installation directory
  • HPC_MEGRAFT_BIN - executable directory

Citation

If you publish research that uses megraft you have to cite it as follows:

Bengtsson, J., Hartmann, M., Unterseher, M., Vaishampayan, P., Abarenkov, K., Durso, L., Bik, E. M., Garey, J. R., Eriksson, K. M., & Nilsson, R. H. (2012). [Title not provided]. Research in Microbiology, 163(6–7), 407–412. https://doi.org/10.1016/j.resmic.2012.07.001

Categories

biology, sequencing