Megalodon¶

Description¶

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transcriptome.

Environment Modules¶

Run module spider megalodon to find out what environment modules are available for this application.

Environment Variables¶

HPC_MEGALODON_DIR - installation directory
HPC_MEGALODON_BIN - executable directory

Categories¶

ngs, genomics