Medaka¶

Description¶

Medaka is a tool to create consensus sequences and variant calls from nanopore sequencing data. This task is performed using neural networks applied a pileup of individual sequencing reads against a draft assembly. It provides state-of-the-art results outperforming sequence-graph based methods and signal-based methods, whilst also being faster.

Environment Modules¶

Run module spider medaka to find out what environment modules are available for this application.

Environment Variables¶

HPC_MEDAKA_DIR - installation directory
HPC_MEDAKA_BIN - executable directory

Categories¶

biology, genomics