mccortex¶
Description¶
Multi-sample de novo assembly and variant calling using Linked de bruijn graphs. Variant calling with and without a reference genome. Between closely related samples or highly diverged ones. From bacterial to mammalian genomes. Minimal configuration.
Environment Modules¶
Run module spider mccortex to find out what environment modules are available for this application.
Environment Variables¶
- HPC_MCCORTEX_DIR - installation directory
- HPC_MCCORTEX_BIN - executable directory
- HPC_MCCORTEX_SCP - scripts directory
Citation¶
If you publish research that uses mccortex you have to cite it as follows:
Categories¶
phylogenetics