Mauve¶
Description¶
Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences. Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours. Run export _JAVA_OPTIONS="-Xmx<MEMORY>" where
Environment Modules¶
Run module spider mauve to find out what environment modules are available for this application.
Environment Variables¶
- HPC_MAUVE_DIR - installation directory
- HPC_MAUVE_BIN - executable directory
- HPC_MAUVE_DOC - documentation directory
Categories¶
biology, ngs, genomics