mashtree

Description

mashtree website

Create a tree using Mash distances

Environment Modules

Run module spider mashtree to find out what environment modules are available for this application.

Environment Variables

• HPC_MASHTREE_DIR - installation directory
• HPC_MASHTREE_BIN - executable directory

Citation

If you publish research that uses mashtree you have to cite it as follows:

Katz, L. S., Griswold, T., Morrison, S., Caravas, J., Zhang, S., den Bakker, H.C., Deng, X., and Carleton, H. A., (2019). Mashtree: a rapid comparison of whole genome sequence files. Journal of Open Source Software, 4(44), 1762

Categories

genomics, biology