mashtree¶
Description¶
Create a tree using Mash distances
Environment Modules¶
Run module spider mashtree to find out what environment modules are available for this application.
Environment Variables¶
- HPC_MASHTREE_DIR - installation directory
- HPC_MASHTREE_BIN - executable directory
Citation¶
If you publish research that uses mashtree you have to cite it as follows:
Katz, L. S., Griswold, T., Morrison, S., Caravas, J., Zhang, S., den Bakker, H. C., Deng, X., & Carleton, H. A. (2019). Mashtree: A rapid comparison of whole genome sequence files. Journal of Open Source Software, 4(44), 1762. https://doi.org/10.21105/joss.01762
Categories¶
genomics, biology