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Maq

Description

maq website

Maq is a software that builds mapping assemblies from short reads generated by the next-generation sequencing machines. It is particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has preliminary functions to handle ABI SOLiD data.

Environment Modules

Run module spider maq to find out what environment modules are available for this application.

Environment Variables

  • HPC_MAQ_DIR - installation directory
  • HPC_MAQ_BIN - executable directory
  • HPC_MAQ_SAMPLE - directory with a sample data file calib-36.dat

Categories

biology, ngs