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mapdamage

Description

mapdamage website

mapDamage2 is a computational framework written in Python3 and R, which tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.

Environment Modules

Run module spider mapdamage to find out what environment modules are available for this application.

Environment Variables

  • HPC_MAPDAMAGE_DIR - installation directory
  • HPC_MAPDAMAGE_BIN - executable directory

Citation

If you publish research that uses mapdamage you have to cite it as follows:

Jónsson, H., Ginolhac, A., Schubert, M., Johnson, P., & Orlando, L. (2013). mapDamage2.0: Fast approximate Bayesian estimates of ancient DNA damage parameters. Bioinformatics, 29(13), 1682–1684. https://doi.org/10.1093/bioinformatics/btt193

Categories

ngs, sequencing, biology