magicblast¶

Description¶

Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of RNA-seq, locating the candidate introns and adding up the score of all exons.

Environment Modules¶

Run module spider magicblast to find out what environment modules are available for this application.

Environment Variables¶

HPC_MAGICBLAST_DIR - installation directory
HPC_MAGICBLAST_BIN - executable directory

Categories¶

genomics, biology