mafsmith

Description

mafsmith website

A complete, fast rewrite of vcf2maf in Rust, designed as a drop-in replacement. mafsmith reimplements the full allele-normalisation and field-mapping logic of vcf2maf.pl and uses fastVEP instead of VEP for annotation.

Environment Modules

Run module spider mafsmith to find out what environment modules are available for this application.

Environment Variables

• HPC_MAFSMITH_BIN - executable directory
• HPC_MAFSMITH_DIR - installation directory

Categories

biology, genomics, ngs