MACSE

Description

macse website

MACSE aligns coding NT sequences with respect to their AA translation while allowing NT sequences to contain multiple frameshifts and/or stop codons. MACSE is hence the first automatic solution to align protein-coding gene datasets containing non-functional sequences (pseudogenes) without disrupting the underlying codon structure. It has also proved useful in detecting undocumented frameshifts in public database sequences and in aligning next-generation sequencing reads/contigs against a reference coding sequence.

Environment Modules

Run module spider macse to find out what environment modules are available for this application.

Environment Variables

• HPC_MACSE_DIR - installation directory
• HPC_MACSE_BIN - executable directory

Categories

bioinformatics