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Macrel

Description

macrel website

Macrel: (Meta)genomic AMP Classification and Retrieval is a pipeline to mine antimicrobial peptides (AMPs) from (meta)genomes.

Environment Modules

Run module spider macrel to find out what environment modules are available for this application.

Environment Variables

  • HPC_MACREL_DIR - installation directory
  • HPC_MACREL_BIN - executable directory

Citation

If you publish research that uses macrel you have to cite it as follows:

Santos-Júnior, C. D., Pan, S., Zhao, X., & Coelho, L. P. (2020). Macrel: Antimicrobial peptide screening in genomes and metagenomes. PeerJ, 8, e10555. https://doi.org/10.7717/peerj.10555

Categories

biology, genomics