loter¶
Description¶
Loter can be used for haplotype phasing and local ancestry inference.
Environment Modules¶
Run module spider loter to find out what environment modules are available for this application.
Environment Variables¶
- HPC_LOTER_DIR - installation directory
- HPC_LOTER_BIN - executable directory
Citation¶
If you publish research that uses loter you have to cite it as follows:
Dias-Alves, T., Mairal, J., Blum, M.G.B., 2018. Loter: A Software Package to Infer Local Ancestry for a Wide Range of Species. Mol Biol Evol 35, 2318–2326. https://doi.org/10.1093/molbev/msy126
Dias Alves, T., 2017. Modélisation du déséquilibre de liaison en génomique des populations par méthodes l’optimisation. PhD manuscript. Grenoble Alpes University. http://www.theses.fr/2017GREAS052
Categories¶
genomics,