LoRMA¶

Description¶

LoRMA is a tool for correcting sequencing errors in long reads like those produced by Pacific Biosciences NGS sequencers.

Run module spider lorma to find out what environment modules are available for this application.

LoRMA needs to be launched for access to LoRMA and lordec binaries. Run the programs listed below with

module load lorma
launch_lorma <executable> <arguments>

Here is a list of LoRMA Executables:

- h5dump
- lordec-build-SR-graph
- lordec-correct
- lordec-stat
- lordec-trim
- lordec-trim-split
- LoRMA
- lorma.sh

If you publish research that uses lorma you have to cite it as follows:

L. Salmela, R. Walve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de Bruijn graphs. Accepted to RECOMB-Seq 2016.

biology, ngs