LongStitch¶
Description¶
A genome assembly correction and scaffolding pipeline using long reads
Environment Modules¶
Run module spider longstitch to find out what environment modules are available for this application.
Environment Variables¶
- HPC_LONGSTITCH_DIR - installation directory
- HPC_LONGSTITCH_BIN - executable directory
Citation¶
If you publish research that uses longstitch you have to cite it as follows:
Coombe L, Li JX, Lo T, Wong J, Nikolic V, Warren RL and Birol I. LongStitch: high-quality genome assembly correction and scaffolding using long reads. BMC Bioinformatics 22, 534 (2021). https://doi.org/10.1186/s12859-021-04451-7
Categories¶
genomics, biology