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LongQC

Description

longqc website

LongQC is a tool for the data quality control of the PacBio and ONT long reads, and it has two functionalities: sample qc and platform qc.

Environment Modules

Run module spider longqc to find out what environment modules are available for this application.

Environment Variables

  • HPC_LONGQC_DIR - installation directory
  • HPC_LONGQC_BIN - executable directory

Citation

If you publish research that uses longqc you have to cite it as follows:

Fukasawa, Y., Ermini, L., Wang, H., Carty, K., & Cheung, M.-S. (2020). LongQC: A quality control tool for third generation sequencing long read data. G3: Genes, Genomes, Genetics, 10(4), 1193–1196. https://doi.org/10.1534/g3.119.400864

Categories

phylogenetics