Lodei¶

Description¶

Lodei is a tool designed for the detection and analysis of A-to-I RNA editing events in RNA-seq data. It offers a collection of programs to identify differentially edited regions between two sets of samples. The primary input for Lodei is sorted BAM files.

Environment Modules¶

Run module spider lodei to find out what environment modules are available for this application.

Environment Variables¶

HPC_LODEI_DIR - installation directory
HPC_LODEI_BIN - executable directory

Categories¶

biology, genomics, rna-seq