LMAP¶
Description¶
A package of user-friendly terminal/command-line and interactive applications developed in Perl, to enable the high-throughput analyses of multiple genes/datasets in PAML (codeml). LMAP was designed for the workstation multi-core environment and enables all the codeml codon substitutions models: site models, branch models, branch-site models and clade models.
Environment Modules¶
Run module spider lmap to find out what environment modules are available for this application.
Environment Variables¶
- HPC_LMAP_DIR - installation directory
- HPC_LMAP_BIN - executable directory
- HPC_LMAP_DOC - documentation directory
- HPC_LMAP_EXE - examples directory
Citation¶
If you publish research that uses lmap you have to cite it as follows:
Categories¶
biology, phylogenetics