LINKS

Description

links website

LINKS is a genomics application for scaffolding genome assemblies with long reads, such as those produced by Oxford Nanopore Technologies Ltd. It can be used to scaffold high-quality draft genome assemblies with any long sequences (eg. ONT reads, PacBio reads, another draft genomes, etc)

Environment Modules

Run module spider links to find out what environment modules are available for this application.

Environment Variables

• HPC_LINKS_DIR - installation directory
• HPC_LINKS_BIN - executable directory
• HPC_LINKS_DOC - documentation directory
• HPC_LINKS_EXE - test directory

Categories

biology, genomics